|
TRANSTHYRETIN
|
|
INDEX • INTRODUCTION • BACKGROUND • BIOLOGICAL ASPECTS • STRUCTURAL ASPECTS : 1.TTR IN COMPLEX WITH THYROXINE 2.TTR IN COMPLEX WITH RBP 3.AMYLOIDOGENIC VARIANTS OF TTR • REFERENCES • LINK TO CHIME FIGURES ORAL PRESENTATION QUESTIONS AND ANSWERS |
Fig 1. TTR showing all the four subunits.Adapted
and modified from PDB file 1ie4
|
|||||||||||||||
|
INTRODUCTION : Transthyretin (formerly called
prealbumin) is a compact globular plasma protein. It was named prealbumin
because it ran ahead of albumin in electrophoresis gel. Transthyretin(TTR)
has monomer molecular weight of approximately 14,000 Da. It is primarily
produced in liver and excreted into the plasma (4
,5
). TTR mRNA is found in kidney cells (6
) and is also uniformly distributed in the cytoplasm and epithelial
cells of choroids plexus(7
). TTR has also been found in pineal gland and retinal pigment
( 8
) In general plasma Transthyretin levels increase gradually after
birth until they reach an adult concentration of 20-40mg/dl, and then
decrease after fifth decade.
Human plasma Transthyretin was crystallized in 1966 from ammonium sulphate solutions by Haupt and Heide( 1 ). It is a tetramer with two alpha beta dimers related by a two fold crystallographic axis. Approximately 45% of the amino acids of the TTR monomer are organized into a sheet of eight beta strands, connected by loops, which result in a classic beta barrel conformation. This unusual high content of beta structure contributed to the extraordinary stability of this molecule. The TTR tetramer is not modified by phosphorylation, glycosylation, or acylation. Transthyretin is one of the major three T4 (3,5,3`,5` - tetraiodo-L-thyronine) binding proteins. It binds and transports 15 – 20 % of thyroxine in serum and up to 80 % of thyroxine in CNS ( 2 ). The thyroxine binding sites are located in a channel (beta barrel) that runs through the centre of the tetramer between two identical dimer units. The ability of TTR to accommodate ligands in a variety of binding modes shows its function as an important transport protein for thyroid molecules. In addition to binding and transporting thyroxine, TTR also transports retinol (Vitamin A) from its main storage site in liver to target cells. The retinol is bound to Retinal Binding Protein (RBP) which, in turn, complexes with transthyretin. RBP would be rapidly eliminated from plasma by glomerular filtration in the kidney if it were not complexed to TTR. Crystal structure of a TTR/RBP complex showed that the TTR tetramer was bound to two molecules of RBP. Rask et al ( 3 ) showed that human RBP exists in two forms only one of which contains retinol.This is the only one which can bind to TTR. Naturally occurring variants of TTR play a role in amyloidosis, a name given to a group of deposition diseases in which insoluble deposits accumulate in tissues. Familial amyloidotic polyneuropathy (FAP) associated with TTR variants represents most frequent form of inherited amyloidosis (10 ) where amyloid fibril deposists contain the variant TTR and usually some normal TTR as well. Several nonsteroidal anti-inflammatory drugs and structurally similar compounds have been found to strongly inhibit the formation of TTR amyloid fibrils in vitro. These include flufenamic acid, diclofenac, flurbiprofen, and resveratrol. Crystal structures of the protein-drug complexes gives a detailed analyses of the protein-drug interactions, that stabilize the functional tetrameric conformation of TTR and inhibit the formation of amyloidogenic TTR (9 ). |
||||||||||||||||
|
BACKGROUND
:
During evolution, transthyretin synthesis first appeared in the choroid plexus of the stem reptiles, about 300 million years ago. Transthretin synthesis in the liver evolved much later, independently, in birds, eutherians and some marsupial species.Analysis of transthyretin in 20 different species shows that evolutionary changes of transthyretin predominantly occurred near the N-termini. TTR as already mentioned is a major thyroxine binding protein with 75% of TTR binding to T4(13 ) apart from Thyroxine binding protein and albumin. When thyroxine is not in bound form it partions into lipid memebranes. TTR counteracts this partition and thus there is more thyroxine in TTR bound form than free form. Dewit Goodman first isolated and sequenced Transthyretin. In 1971 Colin Blake determined X-ray structure of human transthyretin. TTR has a very high beta sheet content unlike other three dimentional stuctures of proteins known at that time.Transthyretin variants cause fatal neurological disease called Familial amyloid polyneuropathy (FAP).Amyloid is deposited at certain tissues, kidney, heart and along peripheral nerves. Previous biophysical studies demonstrated that the mechanism of TTR amyloid fibril formation requires tetramer dissociation to a monomeric conformational intermediate ( 11 , 12 ). This conformational intermediate, generated under conditions simulating the pH of a lysosome (5.5), self-assembles, affording amyloid fibrils (lysosomes are implicated in amyloid fibril formation) ( 14 , 15 ). 57 human transthyretin variants were analysed which suggested that most mutations in transthyretin are not compatible with its normal metabolism and lead to its deposition as amyloid. Based on cryoelectron microscopy and fiber diffraction studies, the diameter of generated amyloid fibril is 130 Å and is made up of four parallel protofilaments (16 ). |
||||||||||||||||
BIOLOGICAL ASPECTS : Though TTR contains no carbohydrate it is highly
acidic.It was first recognized to bind T4 in 1958 (28
). Subsequently it was demonstrated that TTR also forms a complex
with retinol-binding protein and thus plays a role in the transport of
vitamin A (retinol, or trans retinoic acid) (29
, 30
) and have an important role in nervous system. TTR plays a lesser
role in iodothyronine transport in serum relative to that of TBG despite
its 20-fold higher concentration. In the presence of normal levels of
TBG, wide fluctuations in TTR concentration or its removal from serum
has little influence on the concentration of free T4 ( 31
). Some Properties and Metabolic Parameters of TTR are as follows
( 32
):
|
||||||||||||||||
|
||||||||||||||||
| Fig.2 : (a) Transthyretin
(TTR) tetramer (red circles) is synthesised by the choroid plexus of
the brain and by the liver. (b) The tetramer circulates in plasma bound
to retinol-binding protein (RBP; green circle), thereby providing a transport
function for vitamin A; and a small proportion of TTR binds high-density
lipoproteins (HDLs; yellow bar). (c) TTR is degraded in kidney and liver.
In the kidney tubules, TTR is taken up by megalin [a member of the low-density
lipoprotein receptor family], in liver TTR is taken up by Receptor
associated protein which binds to TTR and is responsible for uptake (
25)
(Adapted and modified) |
||||||||||||||||
|
|
||||||||||||||||
|
TTR IN COMPLEX WITH THYROXINE Thyroid hormones are involved in the regulation of growth, development and basal metabolic rate. In humans, insufficient thyroid hormones during gestation leads to mental retardation and cretinism, and in the adult, to lowering of basal metabolic rate and to depression. TTR synthesized by the choroid plexus is involved in transporting T4, but not T3, from the blood into the brain.The amino acids in the thyroid hormone binding sites are identical in all species. However, mammalian TTRs bind T4 with higher affinity than T3, whereas avian TTRs bind T3 with higher affinity than T4. There are two unique hormone-binding sites in the TTR tetramer channel. Differences in the orientation of thyroxine and the position of water molecules in the two binding sites suggest a mechanism for the hormone binding into the channel of TTR. Data were collected to 2.5 Å resolution and the structure was refined to R = 20.9% in the resolution range 12-2.5 Å( 17 ).Structure activity correlations showed that ligands with the greatest binding affinities for TTR have a negatively charged or hydrogen bonding function in the 4` position, negatively charged phenyl substituent,and a tetraiodo substitution pattern of the thyronine nucleus. Products from metabolism of thyroxine have different affinities for TTR, with relative values ranging from 100% for T4 thyroacetic acid,39% for T4,0.07% for 3,3` -diiodothyronine, to less than 0/01% for 3-iodo-thyronine.( 18 ) |
||||||||||||||||
|
Figure.3 The rat TTR-T4 complex structure illustrating the two thyroxine (green) binding domains, with the monomeric subunits indicated by A, B, C and D. ( 19 ).(adapted and modified from PDB file 1ie4) |
|||||||||||||||
|
There are two different
thyroxine-binding modes. In one mode, thyroxine is positioned in the
channel with the phenolic iodines bound in the P2 and P3' pockets of
site AC with binding interactions mediated by the water molecules positioned
in the P3 pocket not containing the T4 iodine. P3 pocket is formed by
ala108,ser117,thr119,leu110 of transthyretin monomer and P2 pocket is formed
by ala109,leu110,lys15,leu17 amino acids of transthyretin.The second binding
site (B/D) binds the ligand with the phenolic iodines positioned in both
P3 and P3' inner pockets. The water molecule found in the middle P2 pocket
mediates the T4-binding interactions. Owing to the formation of a 3.07
Å I O interaction to the main-chain carbonyl groups different
binding modes of T4 is possible (17 ).
|
||||||||||||||||
|
|
||||||||||||||||
|
The transport of vitamin A to the target tissues
is mediated by plasma retinol-binding protein (RBP). Retinol-binding
protein is a member of the lipocalin superfamily. It is composed of an
eight-stranded beta -barrel and a C-terminal alpha-helix and has a molecular
mass of 21 kDa. The retinol is encapsulated by the beta-barrel in the
binding cavity in a hand-in-glove-like fit with the ring end of the retinol
innermost. Only the solvent accessible part is hydorxyl of retinol(
20
).
Among the naturally occurring mutations in transthyretin the mutation of Ile-84 to Asn or Ser supports RBP-TTR complex formation. Individuals with this variant of TTR have RBP concentrations substantially lowered in plasma (20 ) Two molecules of RBP bind to the same TTR dimer at equivalent binding sites. The crystallographic structure at 3.2 Å of the protein-protein complex of human RBP and TTR reveals that RBP binds at a 2-fold axis of symmetry in the TTR tetramer, and consequently the recognition site itself has 2-fold symmetry. Four TTR amino acids (Arg-21, Val-20, Leu-82, and Ile-84) are contributed by two monomers. Amino acids Trp-67, Phe-96, and Leu-63 and -97 from RBP are flanked by the symmetry-related side chains from TTR. In addition, the structure reveals an interaction of the carboxy terminus of RBP at the protein-protein recognition interface. This interaction, which involves Leu-182 and Leu-183 of RBP, is consistent with the observation that naturally occurring truncated forms of the protein are more readily cleared from plasma than RBP with leu182 and leu183. Complex formation prevents extensive loss of RBP through glomerular filtration, and the loss of Leu-182 and Leu-183 would result in a decreased affinity of RBP for TTR. |
||||||||||||||||
|
AMYLOIDOGENIC VARIANTS OF TRANSTHYRETIN
As more than 50 natural mutations are known,
most of which has a higher tendency than the wildtype to form amyloid
transthyretin was chosen as the model protein to study amyloid formation,
. In some individuals amyloid is deposited in the vitreous body.
For several variants the structural effects introduced by the amyloidogenic
mutations have been studied and in most case the contacts between dimers
are altered leading to the destabilization of the tetrameric functional
form of the protein. Biochemical studies also showed that several of
the amyloidogenic mutations alter the protein stability leading to tetrameric
dissociation and favouring an abnormal monomeric structure that polymerises
into several quaternary intermediates and finally into amyloid fibrils
( 21
). There have been more than 20 point mutations of human transthyretin
found so far.
The most common mutation is TTRmet30, where valine is replaced by methionine in residue 30 position.As mentioned already the functional from of tranthyretin is tetramer, having a cylindrical cavity which will bind thyroxin and an exterior binding site for the complex of retinol with retinol binding pretein. The monomer is a beta barrel flattened to become more like a sandwich with residue 30 in the interior. The major differences between normal and Met-30 variant consist of displacement of outer sheet DAGH due to the increased size of the side chain of internal residue 30 and movements in the B-C, D-E and F-G loops of the both molecules A and B. As F strand of B molecule extends one residue longer the DE loop becomes shorter making a different type of turn. In Molecule A this loop is identical in both normal and variant TTR. Substituting bulkier methionyl for valyl residue forces the sheets DAGH and CBEF farther apart by an average of 0.4 A. The movement is bell shaped with maximum change occurring in the opposite residue 30. Sheet DAGH which lines thyroxine binding cavity moves only slightly and sheet CBEF shows larger positional shifts since it is on the surface of the molecule. Movements in the sheet DAGH result in changes in shape of the central cavity which becomes more compressed resulting in poorer fitting of the thyroxine molecule. (22 ) |
||||||||||||||||
|
Fig. 6
Transthyretin naturally occurring variant with 1:1 mix of
val(green) and met(blue) at position 30 complexed with thyroxine(red) (3,5,3',5'-tetraiodo-l-thyronine)
Adapted and modified from PDB file 1ETA
|
||||||||||||||||
|
|
||||||||||||||||
|
REFERENCES :
1. Haupt H. and Heide K (1966) Kristallisation des prealbumins aus human serum. Experimentia 22: 449-451 2. Hagen G. A and Ellliot W. J.919730 Transport of thyroid hormones in serum and cerebrospinal fluid. J. Clin. Endocrinnol. 37 : 415-422 3. Rask L., Vahlquist A. and Peterson P.A. (1971) Studies on two physiological forms of the human retinol binding pretein deffering in Vitamin A and Arginine content. J. Biol. Chem. 246 : 6638 – 6646 4. Felding P and Fex G. (1982) Cellular origin of prealbumin in the rat. Biochem. Biophys. Acta 716 : 446-449 5. Mita S., Maeda S., Shimada K and Araki S (1986)Analyses of prealbumin mRNAs in individuals with familial amyloidotic polyneuropathy. J. Biochem (Tokyo) 100 :1215-1222 6. Wagasugi, S., Maeda S and Shimada K (1986) Structure and expression of the mouse prealbumin gene. J Biochem. (Tokyo) 100:49-58. 7. HerbertJ., Wilcox J.N., Pham K –T.C., Fremeau R.T., Zeviana M., Dwork a., Soprano D.R et al(1986) Transthyretin : Choroid plexus – specific transport protein in human brain. Neurology 36 : 900-911 8. Mortone R.L., Mizuno R. and Herbert J (1992) The mammalian pineal is a synthetic site for transthyretin and retinal binding protein. 2nd international symposium on Familial Amyloidotic Polyneuropathy and Other Tranthyretin Related Disorders, Skellefta, Sweden. Program and Abstracts, 0.3, p 15 9. Klabunde T, Petrassi HM, Oza VB, Raman P, Kelly JW, Sacchettini JC (2000) Rational design of potent human transthyretin amyloid disease inhibitors. Nat Struct Biol. Apr;7(4):312-21 10. Benson M. D (2001) Amyloidosis. In: The Metabolic Basis of Inherited Disease 8th ed., Scriver C. R., Beaudet A. L., Sly W.S., Vale D., Childs B., Kinzler K. W and Vogelstein B. (eds), pp. 5345 – 5378, McGraw Hill, Columbus, Ohio 11. Colon, W. & Kelly, J. W. (1992) Biochemistry 31, 8654-8660 [ISI][Medline] 12. Lai, Z., Colon, W. & Kelly, J. W. (1996) Biochemistry 35, 6470-6482 13.Herbert, J., Wilcox, J. N., Pham, K. T., Fremeau, R. T., Zeviani, M., Dwork, A., Sopprano, D. R., Makover, A., Goodman, D. S., Zimmerman, et al. (1986) Neurology 36, 900-911 [Abstract]. 14.Badman, M. K., Pryce, R. A., Charge, S. B. P., Morris, J. F. & Clark, A. (1998) Cell Tissue Res. 291, 285-294 [CrossRef][ISI][Medline] 15.Kelly, J. W. (1998) Curr. Opin. Struct. Biol. 8, 101-106 [ISI][Medline]. 16.Blake, C. & Serpell, L. (1996) Structure (London) 4, 989-998 [Abstract]. 17.. Andrzej Wojtczak,a Vivian Cody,b* Joseph R. Luftb and Walter Pangbornb Structure of rat transthyretin (rTTR) complex with thyroxine at 2.5 A resolution: first non-biased insight into thyroxine binding reveals different hormone orientation in two binding sites. Acta Crystallogr D Biol Crystallogr. 2001 Aug;57(Pt 8):1061-70. 18.Jorgensen, E. C. (1971). Hormonal proteins and peptides,edited by C.H.Li Vol 6.pp 108-204. New york: Academic press. 19.Evans, S. V. (1993). J. Mol. Graph. 11, 134-138. 20.Helen M. Naylor and Marcia E. Newcomer* The Structure of Human Retinol-Binding Protein (RBP) with Its Carrier Protein Transthyretin Reveals an Interaction with the Carboxy Terminus of RBP Biochemistry, 38 (9), 2647 -2653, 1999. 21. Sebastiao, M. P., Lamzin, V., Saraiva, M. J., Damas, A. M.: Transthyretin Stability as a Key Factor in Amyloidogenesis: X-Ray Analysis at Atomic Resolution. J.Mol.Biol. 306 pp. 733 (2001) 22.Hamilton, J. A., Steinrauf, L. K., Braden, B. C., Liepnieks, J., Benson, M. D., Holmgren, G., Sandgren, O., Steen, L.: The x-ray crystal structure refinements of normal human transthyretin and the amyloidogenic Val-30-->Met variant to 1.7-A resolution. J Biol Chem 268 pp. 2416 (1993) 25. Maria João Mascarenhas Saraiva: Hereditary transthyretin amyloidosis: molecular basis and therapeutical strategies. Expert Reviews in Molecular Medicine 14 May 2002 26.Schreiber, G. and Richardson, S.J. (1997): The Evolution of Gene Expression, Structure and Function of Transthyretin. Comp. Biochem. Physiol. 116B: 137-160. 28.Abe T, Kakyo M, Sakagami H et al: Molecular characterization and tissue distribution of a new organic anion transporter subtype (oatp3) that transports thyroid hormones and taurocholate and comparison with oatp2. J Biol Chem 273:22395-22401,1998 29. Friesema ECH. Doctor R, Moerings EPCM, et al. Identification of thyroid hormone transporters. Bioch. Bioph. Res, Comm.1999, 254,497-501. 30.Hennemann G, Docter R, Friesema , de Jong M, Krenning EP, Visser TJ. Plasma membrane transport of thyroid hormones and its role in thyroid hormone metabolism and bioavailabilty. Endocrine Rev, Aug, 2001 31. Woeber KA, Ingbar SH. The contribution of thyroxine-binding prealbumin to the binding of thyroxine in human serum, as assessed by immunoadsorption. J. Clin. Invest. 47: 1710-1721, 1968. 32.Georg Hennemann ,Cellular Uptake of Thyroid Hormones, Chapter 3B,Thyroid Disease Manager, 24 April 2001 |
||||||||||||||||
|
CHIME STRUCTURES
|
||||||||||||||||